Cauliflower Reference Genome
The Cauliflower genome, which was used as reference was the Korso accession. Together with this annotation.
Homology Grouping Files from PanTools
The files in this table contain all homology groups for the mentioned data. These contain only the longest isoform per gene (translated into protein). Gene trees are not included in these files, but can be generated if anyone is interested.
NB: The old virosa genome + annotation is still used here, as well as the original serriola annotation.
| Files | Description | Similarity | Outspecies | Species | Comments |
|---|---|---|---|---|---|
| Homology grouping for panproteome on species level | 15 Brassica oleracea genomes | 75% | No |
|
|
| 20210709_Eudicots_LettuceKnow_PanTools_Optimal_Similarity_ARAPORT11.csv | 25 eudicots | 45% | Yes |
|
|
| 20210709_Eudicots_LettuceKnow_PanTools_Low_Similarity_ARAPORT11.csv | 25 eudicots | 25% | Yes |
|
LOW SIMILARITY: USE WITH CARE |
| 20210716_All_Lactuca_LettuceKnow_PanTools_Optimal_Similarity.csv | 12 Lactuca plus Helianthus annuus | 55% | Yes |
|
|
| 20210716_Only_Lactuca_LettuceKnow_PanTools_Optimal_Similarity.csv | 12 Lactuca | 75% | No |
|
|
| 20210716_Core_Eudicots_LettuceKnow_PanTools_Optimal_Similarity_ARAPORT11.csv | 23 eudicots | 45% | No |
|
|
| 20210716_Core_Eudicots_LettuceKnow_PanTools_Low_Similarity_ARAPORT11.csv | 23 eudicots | 25% | No |
|
LOW SIMILARITY: USE WITH CARE |